μ μ μ
matk_193f trnk_670f matk_520r matk_1246r rbcl accd matk matk trnk (5 ) trnk (3 ) trnk_670f CTGTATCGCACTATGTATC matk_193f GTTATTCGAATGTATCAACAG matk_520r CTCATGCTTGCATTTATTACG matk_1246r CTTTCTCATTATTACAGCGG rbcl_70f accd_79r accd_2644r rbcl rbcl_70f accd_79r accd_2644r accd GAAGTATGGAAGGAAATCA ACAACATCGAATTAAACCAC TGAGAATGAAGATAACTGTC
A B 2 cm 2 cm
Gap (ca. 150 bp long deletion) Muehlenbeckia Fallopia Rumex Rheum Oxyria Atraphaxis Polygonum Fagopyrum Persicaria Bistorta Aconogonon Coccoloba Antigonon Brunnichia Ruprechtica Triplaris Eriogonum Chorizanthe Outgroup TTTTCTTTCGTT-------------------------------------------------------------------------------------------------- TTTTCTTTCGTT-------------------------------------------------------------------------------------------------- TTTTCTTCCGTT-------------------------------------------------------------------------------------------------- TTTTCTTCCATT-------------------------------------------------------------------------------------------------- TTTTCTTCCGTT-------------------------------------------------------------------------------------------------- TTTTCGTTCGTT-------------------------------------------------------------------------------------------------- TTTTCTTTCGTT-------------------------------------------------------------------------------------------------- TTTTCTTCCGTT-------------------------------------------------------------------------------------------------- TTTTCTTCTGTT-------------------------------------------------------------------------------------------------- TTTTCTTC------------------------------------------------------------------------------------------------------ TTTTCTTC------------------------------------------------------------------------------------------------------ TTTTCTTCCGTA---------TTGGAATAGAAACTTT-----AGACGA----GA--TTTTACTAAAAAAATTTATTCATGGAAAAGAATAAATATTTTTTTT----CTGT TTTTCTTACGTA---------TTGGAATAGAAACTTT-----AGACGA----GA--TTTTACGAAAAAAA-TTATTCATGGAAAAGAAGAAATATTTCTTTTT---CTGT TTTTCTTCCGTA---------TTGGAATAGAAACTTT-----AGACGA----GA--TTTTACGAAAAAAA-TTATTCAGTGAAAAGAATAAATATTTTTTTTT---CTGT TTT-CTTCCGTA---------TTGGAATAGAAACTTT-----AGACGA----GA--TTTTACGAAAAAAA-TAATTCATGGAAAAGAATAAATATTTTTTTTTT--CTGT TTTTCTTCCGTA---------TTGGAATAGAAACTTT-----AGACGA----GA--TTTTACGAAAAAAA-TTATTCATGGAAAAGAATAAATATTTTTTTT----CTGT TTTTCCTCCGTC---------TTGAAATAGAAACTTT-----AGACGA----GA--TTTTACGAACAAAAATTTTGCATGGAAAAGAAT-CATTTTTTTT------CTTT TTTTCCTCCGTC---------TTGAAATAGAAACTTT-----AGACGA----GA--TTTTACGAACAAAAATTTTGCATGGAAAAGAAT-AATTTTTTT-------CTTT CCTTCGTCCGTATGTATGTATTTGGACTAGAAACTTTTTGTTAGACGAAAATGAAAATGTACGAAAAAAA----------GAAGAGAAGCAAAATTTCCTCTCTT-CTTT Gap (ca. 150 bp long deletion) Muehlenbeckia Fallopia Rumex Rheum Oxyria Atraphaxis Polygonum Fagopyrum Persicaria Bistorta Aconogonon Coccoloba Antigonon Brunnichia Ruprechtica Triplaris Eriogonum Chorizanthe Outgroup ----------------------------------------------------------TTTTCTATTCCAA ----------------------------------------------------------TTTTCTATTCCAA --------------------------------------------------------TTTTTTATATTAC-- ---------------------------------------------------------TGTTTATATTACAA ---------------------------------------------------------TTTTTATATTACAA ----------------------------------------------------------TTTTCTATTACAA ----------------------------------------------------------TTTTCTAGTACAA --------------------------------------------------------TTTTTTATATTACAA ---------------------------------------------------------TTTTTATATTCCAA ---------------------------------------------------------TTTTTCTATTCCAA ---------------------------------------------------------TTTTTATATTCCAA TGATGCGAATTTCACACGACATGG------AAAAACCCCTAATTTTTTT-ATTTATATTTTTATATTCCAA TGATGCGAATTTCACACGACACGT------AAAAACCCCTACTTT-----ATTTCTATTTTGATATTCCAA TGATGCGAATTTCACACGACACGG------AAAAACCCCTACTTTTTTT-ATTTATATTTTTATATTCCAA TGATGCGAATTTCACACGACATGG------AAAAACCCCTACTTTATTTTATTTCTATTTTTCTATCCCAA TGATGCAAATTTCACACGACATGG------AAAAACCCCTACTTTATTTTATTTCTATTTTTCTATTCCAA TGATGCGAATTTCACACGACATGT------AAAAACCACTACTTTTTTTT----ACATTTTTATATTCCAA TGATGCGAATTTCACACGACATGT------AAAAACCACTACTTTTTTTT----ACATTTTTATATTCCAA TGCTGCGAATTTCACACGACATGAAAACATGAAAACCCCTACTTC-------------------ATTCGAA
87 87 99 57 99 98 93 83 82 99 68 76 72 93 93 99 85 90 75 62 60 61 98 69 97 Muehlenbeckia complexa M. volcanica Fallopia baldschuanica F. scandens F. dumetorum F. convolvulus F. dentatoalata F. koreana F. ciliinervis F. cilinodis F. japonica F. forbesii F. sachalinensis F. multiflora Atraphaxis billardieri Polygonum aviculare P. arenastrum Rumex maritimus R. obtusifolius R. crispus R. longifolius R. acetosa R. acetosella Rheum officinale Oxyria digyna Fagopyrum esculentum Persicaria breviochreata P. thunbergii P. muricata P. senticosa P. perfoliata P. filiformis P. neofiliformis P. lapathifolia P. orientalis P. pubescens P. hydropiper P. viscofera P. amphibia_kor1 P. amphibia_kor2 P. chinensis P. nepalensis Bistorta ochotensis B. manshuriensis B. alopecuroides B. suffulta Aconogonon microcarpum A. alpinum A. divaricatum Coccoloba peltata C. diversifolia C. uvifera Ruprechtica coriacea Triplaris americana Eriogonum elongatum E. latifolium Chorizanthe rigida C. cuspidata Antigonon leptopus Brunnichia ovata Afrolimon purpuratum Limonium cavanillesii Coccolobeae Polygoneae Rumiceae Polygoneae Persicarieae Coccolobeae Triplarieae Eriogoneae Coccolobeae Outgroup Polygonoideae Eriogonoideae